Single Cell Core Facility of Flemingsberg Campus (SICOF)

Welcome to The SICOF Web Portal! This is a temporary site until our KI.se website is live.                        

On this page, you will find the latest information on SICOF

Link to our manual for SICOF interaction: Click here 

Latest news

 

2022-06-13: Price increase

Dear all,

Due to the current inflation and weakness of the Swedish crown, we are unfortunately forced to adjust our pricing. We have carefully checked all of our reagents and running costs, and will provide new pricing over the next few days.

Best regards,

SICOF

 

 

About us

In 2021, the Single cell core facility for Flemingsberg campus (SICOF) was established as a new, state of the art core facility to support the Karolinska Institutet South Campus research community. Our goal is to facilitate the use of single cell/nuclei sequencing technologies for all researchers. We offer several pipelines for single cell analysis, ranging from small scale ultra-sensitive solutions like Smart-seq2/3 sequencing up to larger scale droplet-based sequencing. For the latter, we use the solutions provided by 10x Genomics and can thus provide assistance with all of 10x Genomics’ products, including single nuclei ATAC-seq and the newly released Single Cell Multiome ATAC + Gene Expression assay. In addition to that, we also provide the opportunity to use our pipelines for drug screening experiments (Drug-seq) and other custom solutions. We aim to provide all researchers with clustered data that can be interpreted and analyzed without the need for a bioinformatician.

We are a team of six members: One administrator, one bioinformatician, three research engineers and one head of facility. Our laboratory is equipped with high-precision dispensers/handlers, such as an Agilent Bravo, a Labcyte Echo 525 and several smaller-scale dispensers. For QC of single cell libraries, we have three Agilent Bioanalyzers and an Agilent Fragment Analyzer. We perform our sequencing on our own Illumina HiSeq3000, which is also available for customers to run their own libraries.

 

Location and hours of operation

Hours

Location

Monday - Friday

9:00AM - 16:00PM           

NEO, Blickagången 16

Floor 7, elevator S

SE-141 57 Huddinge, Sweden

 

Shipping address

OBS: Do not ship samples to us without filling in a sample submission request!

Single Cell Core (SICOF) Room 7333
Karolinska Institutet | Institutionen för Medicin Huddinge
Hälsovägen 7C
Neo, plan 8
141 57 Huddinge
Tel 46 (0)8 52 48 34 18

E-mail: singlecellseq@ki.se 

Contacts

Name Role Phone Email Location
Single Cell Core (SICOF) mailbox

 
0706579511
 
singlecellseq@ki.se
 
Room 7333, NEO, floor 7, elevator M1
 
Michael Vanlandewijck
Head of Facility
 

 
michael.vanlandewijck@ki.se
 
NEO, floor 7, elevator S